Perform splitting of Oxford Nanopore sequencing data in a fail and pass dataset using a user defined quality cutoff. The script can read compressed input and will write to gzip compressed files.
INSTALLATION
pip install NanoSplit
USAGE
NanoSplit [-h] [-q QUALITY] [--outdir OUTDIR] fastqfile
Required arguments:
fastqfile Fastq file to split, can be gz compressed.
Optional arguments:
-h, --help show this help message and exit
-q QUALITY, --quality QUALITY
Splitting on this average read quality score
Default: 12
--outdir OUTDIR Specify directory in which output has to be created.
EXAMPLES
NanoSplit reads.fastq.gz NanoSplit -q 6 reads.fastq.gz NanoSplit -q 10 --outdir /home/user/datasetsplit/ reads.fastq
1 maintainer
Metadata
1 maintainer
Release files for NanoSplit 0.1.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| NanoSplit-0.1.4.tar.gz | 2.7 kB | Without provenance | Details for NanoSplit-0.1.4.tar.gz |
Release files / NanoSplit-0.1.4.tar.gz
| Download URL | NanoSplit-0.1.4.tar.gz |
|---|---|
| Size | 2.7 kB |
| Tags | Source |
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Security for NanoSplit 0.1.4
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