Module to identify intranuclear proteins on basis of fluorescence images.
Project description
NucDetect - A python package for Detection and Quantification of DNA Doublestrand Breaks (v0.5)
NucDetect is a Python package for the detection and quantification of γH2AX and 53BP1 foci inside nuclei. Its written in pure Python 3.7, obeys the PEP 8 style guidelines and includes PEP 484 type hints as well as Epytext docstrings.
Note
The current release is a very early alpha version. Please report report any detected bugs and/or improvement suggestions.
Requirements
NucDetect is compatible with Windows, Mac OS X and Linux operating systems. It requires the following packages:
- scipy>=0.19.0
- numpy>=1.13.3
- scikit-image>=0.15
- matplotlib >= 3.0.2
- PyQT5 >= 5.11.3
- Pillow
- qtawesome
- piexif
- tensorflow == 1.13.1
- numba >= 0.45.1
Run the following commands to clone and install from GitHub.
$ git clone https://github.com/SilMon/NucDetect.git
Supported Image Formats
Following image formats are supported by NucDetect:
- TIFF
- PNG
- JPG
- BMP
Author: Romano Weiss
Co-Author: Stefan Rödiger
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