NucDetect 0.5.1.dev1

Module to identify intranuclear proteins on basis offluorescence images.

# NucDetect - A python package for Detection and Quantification of DNA Doublestrand Breaks (v0.5)

NucDetect is a Python package for the detection and quantification of γH2AX and 53BP1 foci inside nuclei. Its written in pure Python 3.7, obeys the PEP 8 style guidelines and includes PEP 484 type hints as well as Epytext docstrings.

### Note The current release is a very early alpha version. Please report report any detected bugs and/or improvement suggestions.

Requirements

NucDetect is compatible with Windows, Mac OS X and Linux operating systems. It is coded using Python 3.6. It requires the following packages:

• scipy>=0.19.0

• numpy>=1.13.3

• scikit-image>=0.15

• matplotlib >= 3.0.2

• PyQT5 >= 5.11.3

• Pillow

• qtawesome

• piexif

• tensorflow == 1.13.1

• numba >= 0.45.1

Run the following commands to clone and install from GitHub.

`console $ git clone https://github.com/SilMon/NucDetect.git ` ### Supported Image Formats Following image formats are supported by NucDetect: * TIFF * PNG * JPG * BMP ___

Author: Romano Weiss

Co-Author: Stefan Rödiger