Pan-ChIP-seq Analysis of Peak Sets
Project description
PanChIP
Pan-ChIP-seq Analysis of Peak Sets
Installation
pip install panchip
Usage
panchip [options]
Commands:
init Initialization of the PanChIP library
analysis Analysis of a list peat sets
Run panchip <command> -h for help on a specific command.
PanChIP: Pan-ChIP-seq Analysis of Peak Sets
positional arguments:
command Subcommand to run
optional arguments:
-h, --help show this help message and exit
--version show program's version number and exit
panchip init [-h] library_directory
Initialization of the PanChIP library
positional arguments:
library_directory Directory wherein PanChIP library will be stored. > 4.2
GB of storage required.
optional arguments:
-h, --help show this help message and exit
panchip analysis [-h] [-t THREADS] [-r REPEATS] library_directory input_directory output_directory
Analysis of a list peat sets
positional arguments:
library_directory Directory wherein PanChIP library was stored.
input_directory Input directory wherein peak sets in the format of .bed
files are located.
output_directory Output directory wherein output files will be stored.
optional arguments:
-h, --help show this help message and exit
-t THREADS Number of threads to use. (default: 1)
-r REPEATS Number of repeats to perform. (default: 1)
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
PanChIP-1.0.14.tar.gz
(3.6 kB
view hashes)