The BAM parsing is done using c and a few external libraries. At minimum you will need:
gcc libcfu htslib
Notes on installing htslib: For various resons we need to install a statically linked version of htslib. When making use this command instead of just ‘make’:
make CFLAGS=’-g -Wall -O2 -fPIC -static-libgcc -shared’
Then it should be as simple as
pip install ParseM
## Example usage
If you experience any problems using ParseM, open an [issue](https://github.com/minillinim/ParseM/issues) on GitHub and tell us about it.
## Licence and referencing
Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/ParseM
This software is currently unpublished
Copyright (c) 2014 Michael Imelfort, Donovan Parks. See LICENSE.txt for further details.