Python wrapper for pgenlib's basic reader and writer.
Project description
This provides a basic Python API for pgenlib (See python_api.txt for details.)
Build this with this.
Cython and NumPy must be installed.
python3 setup.py build_ext
[sudo] python3 setup.py install
Example usage:
#write a 2 sample file
import numpy as np
import pgenlib as pg
with pg.PgenWriter("test.pgen".encode("utf-8"), 2, 3, False) as writer:
writer.append_alleles(np.array([0,1,1,1],dtype=np.int32))
writer.append_alleles(np.array([0,1,0,0],dtype=np.int32))
writer.append_alleles(np.array([0,0,0,0],dtype=np.int32))
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Pgenlib-0.81.2.tar.gz
(385.2 kB
view hashes)
Built Distribution
Close
Hashes for Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 225113136bdc7079198d4e25fe40424dfa03d388378c13c4bae1c673e03122ed |
|
MD5 | ba06c0f1e53f11d46dd17c7f6da469f0 |
|
BLAKE2b-256 | 2206d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02 |