A deep learning toolbox for decoding animal behaviour
Project description
PoseR
A deep learning toolbox for decoding animal behaviour
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
Create an anaconda environment:
conda create -n PoseR python=3.10
Activate PoseR environment:
conda activate PoseR
Install CUDA if using NVIDIA GPU:
conda install -c "nvidia/label/cuda-11.7.0" cuda
Install Pytorch: For GPU:
conda install pytorch torchvision torchaudio pytorch-cuda=11.7 -c pytorch -c nvidia
For CPU only version:
conda install pytorch torchvision torchaudio cpuonly -c pytorch
Install napari:
pip install napari["all"]
You can install PoseR
via pip:
pip install PoseR-napari
To install latest development version :
pip install git+https://github.com/pnm4sfix/PoseR.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "PoseR" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Project details
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