A Python Package for Protein Dynamics Analysis
Project description
SYNOPSIS
ProDy is a free and open-source Python package for protein structure, dynamics, and sequence analysis. It allows for comparative analysis and modeling of protein structural dynamics and sequence co-evolution. Fast and flexible ProDy API is for interactive usage as well as application development. ProDy also comes with several analysis applications and a graphical user interface for visual analysis.
GETTING PRODY
You can run ProDy on all major platforms. For download and installation instructions see:
DOCUMENTATION
Homepage: http://www.csb.pitt.edu/ProDy
Examples: http://www.csb.pitt.edu/ProDy/examples
Tutorial: http://www.csb.pitt.edu/ProDy/tutorial
Reference: http://www.csb.pitt.edu/ProDy/reference
Applications: http://www.csb.pitt.edu/ProDy/apps
NMWiz GUI: http://www.csb.pitt.edu/NMWiz
SOURCE CODE
Source code: https://bitbucket.org/abakan/prody
Issue tracker: https://bitbucket.org/abakan/prody/issues
LICENSE
ProDy is available under GNU General Public License version 3. See LICENSE.txt for more details.
Biopython (http://biopython.org/) KDTree and pairwise2 modules are distributed with the ProDy package. Biopython is developed by The Biopython Consortium and is available under the Biopython license (http://www.biopython.org/DIST/LICENSE).
The pyparsing (http://pyparsing.wikispaces.com/) module is distributed with the ProDy package. Pyparsing is developed by Paul T. McGuire and is available under the MIT license (http://www.opensource.org/licenses/mit-license.php).
The argparse module (http://code.google.com/p/argparse/) is distributed with the ProDy package. Argparse is developed by Steven J. Bethard and is available under the Python Software Foundation License.
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