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A Python library for working with the Low Entropy Model Specification language (LEMS)

Project description

A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models

Usage as a LEMS model simulator

pylems [options] LEMS_file

Options

  • -I/-include path - Adds a directory to the model file include search path

Examples

NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)

  • Example 0 – Working
  • Example 1 – Working
  • Example 2 – Working
  • Example 3 – Working
  • Example 4 – Not working (Unsupported in PyLEMS: KSChannel)
  • Example 5 – Working
  • Example 6 – Working
  • Example 7 – Working
  • Example 8 – Working
  • Example 9 – Working
  • Example 10 – Working
  • Example 11 – Working
  • Example 12 – Not working (Unsupported in PyLEMS: Property)
  • Example 13 – Working
  • Example 14 – Not working (Unsupported in PyLEMS: Property)
  • Example 15 – Working
  • Example 16 – Working (apart from spikeArray)
  • Example 17 – Working
  • Example 18 – Working

LEMS elements that do not work

  • XPath based parameters - PathParameter
  • Assertions

Tasks TODO

  • Implement flattening
  • Decouple events from runnables
  • Perform dimension-checking on expressions.
  • Implement LEMS API over lems.model.* (NeuroML API?) - Interface with libNeuroML and Pyramidal to export Neuron MOD files - Export C files (Interface? Steve Marsh’s project?)
  • Assertions.
  • XPath implementation.
  • Implement Runnables from Component types instead of expanded typeless Components (Required for efficient C/C++ code generation, but conflicts with flattening)

Travis integration

pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.org/).

[![Build Status](https://travis-ci.org/LEMS/pylems.png?branch=master)](https://travis-ci.org/LEMS/pylems)

Project details


Release history Release notifications

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0.4.9.1

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0.4.9

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0.4.8

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0.4.5

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0.4.4

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0.3.7

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0.3.5

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0.3.4

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0.3.3

This version
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0.3.2.1

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0.3.2

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0.3.01

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0.3.0

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Filename, size & hash SHA256 hash help File type Python version Upload date
PyLEMS-0.3.2.1.tar.gz (46.0 kB) Copy SHA256 hash SHA256 Source None Feb 21, 2014

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