A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Hashes for PyRuSH-1.0.5-cp310-cp310-win_amd64.whl
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MD5 | 86e385a858bb10dcf857e34f2adebccb |
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Hashes for PyRuSH-1.0.5-cp310-cp310-macosx_10_9_x86_64.whl
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MD5 | 5d17e291e3bd1c25efbe1e8b678653e9 |
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Hashes for PyRuSH-1.0.5-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | bc1f3e6fe941114a7eab6831deae29f6 |
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Hashes for PyRuSH-1.0.5-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f5a74d92e0cd94f34ed85f59281aeed1 |
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Hashes for PyRuSH-1.0.5-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | 4796d145c642de60609146215bbd263f |
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Hashes for PyRuSH-1.0.5-cp39-cp39-macosx_10_9_x86_64.whl
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MD5 | 00caa5039c2358620bf04cb8ed425eea |
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Hashes for PyRuSH-1.0.5-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | a9196c031a5009b0629eb195e5c354ec |
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BLAKE2b-256 | b87d0cc5b69eea3c2bca965a2855b82404ad2f9da3dfd2c5e44d3717e2a3e2e9 |
Hashes for PyRuSH-1.0.5-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 108e410d87e8a2aae284fd966e88152b |
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Hashes for PyRuSH-1.0.5-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 9d822a6091701addf2e93c2ec7430a7d |
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BLAKE2b-256 | 1f297114942609de2c6cf061354580b273170d7b7b0fb0ba969c9595940511e4 |
Hashes for PyRuSH-1.0.5-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | dd76379c7d72e013fef99be4136c4339 |
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BLAKE2b-256 | ba7ed30bf1bafb217fd31fee7d63ea01a84569e0a92660778258808e47ab972c |
Hashes for PyRuSH-1.0.5-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 2566556ea5565169ea00d94e695ae3ef |
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BLAKE2b-256 | cdd9e102cb49097811f885ad08f46316ae2f2e285660164303ec3dc1e17a2494 |
Hashes for PyRuSH-1.0.5-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | faef7b081ca0f4ba336f365eabb1f983 |
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BLAKE2b-256 | f1b8d95c735f9eb84b1c25c5ee9f86ee6654f30ddb9b1f93a6128ebf8e0a6a63 |
Hashes for PyRuSH-1.0.5-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 5afcd8e4036e6e0084d549ad7b9d441e |
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BLAKE2b-256 | 1937e6f90a7bcec89a038f7072d637339a55e270e5b6d639ed75eabe96cdb7e8 |
Hashes for PyRuSH-1.0.5-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 65ec20990cd8e75631426cd3b3a7ca99 |
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Hashes for PyRuSH-1.0.5-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 9854d9c56037e3de0ddc6bc20419eb75 |
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BLAKE2b-256 | 72d3347ba37d68f30873e5de503fd6849d068d23a7cd511046660256590b0da6 |
Hashes for PyRuSH-1.0.5-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | d4b7ff0813fe5939b515a7c608f6343e |
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Hashes for PyRuSH-1.0.5-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f2c60368723b724911471c215b599058 |
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BLAKE2b-256 | fb3d2bed0f35375197c7bf03718220ab5597c7a071ad586c98e5ff8a6263230f |
Hashes for PyRuSH-1.0.5-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f3c5f4ff0d129e048146d5d4c7d45293 |
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