A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.8.dev2-cp311-cp311-win_amd64.whl
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Hashes for PyRuSH-1.0.8.dev2-cp311-cp311-musllinux_1_1_x86_64.whl
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MD5 | b325d34064187062f92d51e13b6c3edb |
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Hashes for PyRuSH-1.0.8.dev2-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | d4fecaee221ec54a12fff6111a7920f2 |
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Hashes for PyRuSH-1.0.8.dev2-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 451750f180dbe1a6ee82ada5bb8f7aa1 |
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BLAKE2b-256 | 1437b967b9d8299c9b5de3cd4df160921fed1165472cfbf7ca378ac0d5a673dd |
Hashes for PyRuSH-1.0.8.dev2-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | eaa17cc694a83141ce641743a03269d3 |
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BLAKE2b-256 | c6e5b9e111d7f211269da16950680d26c242c248503df731fc88ce019eb2327c |
Hashes for PyRuSH-1.0.8.dev2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | a0b8a3bc529ca31ec7930a6fd4a8917a |
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BLAKE2b-256 | 007c06f273708aee7d0dc115aea88b2798e72796d7ec7d6064731f5ac91cdf01 |
Hashes for PyRuSH-1.0.8.dev2-cp310-cp310-macosx_10_9_x86_64.whl
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MD5 | e2bd750edf02e64b55a5971626c705a4 |
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Hashes for PyRuSH-1.0.8.dev2-cp39-cp39-win_amd64.whl
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MD5 | 6b7a7310d5dffb3bfcde79799891f7c8 |
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BLAKE2b-256 | c24287a93ed5acdee074ddbd6e77770db70b675799e7b3fc7eb9615e0fd8f148 |
Hashes for PyRuSH-1.0.8.dev2-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 51ce68f14220828323d09ceb4f5e33e4 |
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BLAKE2b-256 | df7c9ba233823be79b3cb52f7a4a0fd5109b8b0f36cfbe651fa833d5e35b5086 |
Hashes for PyRuSH-1.0.8.dev2-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7fbe98d6fc3a523314be984d77be8cb5 |
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BLAKE2b-256 | 0726e7df403526fb2d258545e55b7b5f6497a2c20b8b7c38a05203bc5519083b |
Hashes for PyRuSH-1.0.8.dev2-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7024d712ab5031270dc3989f3d0bcdf1 |
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BLAKE2b-256 | fba9a90465a583356b0188d6f5e2fe26ccbad2e1405d52991dcabae5f3b02d96 |
Hashes for PyRuSH-1.0.8.dev2-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 53456f5077c9298b1f9c380f0723e8ef |
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BLAKE2b-256 | 2c091cdd39a59316c515ef8ae744068f199e43aeaa087ced7e29ef048015e55f |
Hashes for PyRuSH-1.0.8.dev2-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | b2fb3e0ddf0b1e70be8f461b36283302 |
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Hashes for PyRuSH-1.0.8.dev2-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 8a727098aee20ea257b12f4e5acd6b9a |
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BLAKE2b-256 | 992b41fc2d0af55ca52d58a79eb9a42fa0b2618ec6f92dceecbc5e64f999c352 |
Hashes for PyRuSH-1.0.8.dev2-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | ae6df0dac62d77d1f4fbce3461f2c86a4cc8625b4bde2f82808a765372da228a |
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MD5 | 8ce77707e2fa1c7003cc0e38a2fb223f |
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BLAKE2b-256 | 01412c7344ec2e480d6f996f9ab916d35ea4c66b31015a0a54689d7ba13e492a |
Hashes for PyRuSH-1.0.8.dev2-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | e681392138fd4cdbb99459152d2b31a3 |
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BLAKE2b-256 | 3b77203b32266f3c7329fbe8e9d712d3ac4a33ae1f81098ab5e17f7cc38792f8 |
Hashes for PyRuSH-1.0.8.dev2-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | cc2b7da25bebf85a1c32ce8da47d7b6b |
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Hashes for PyRuSH-1.0.8.dev2-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 0b4cfc08a1d5db7ced2002ed54308d24 |
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BLAKE2b-256 | 1df6bedd59b08ab582b5792d7a85ebe590600e7ac7db75ae539d0442ad4cf852 |
Hashes for PyRuSH-1.0.8.dev2-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | d5a48e33e32102466a3773913e685a85 |
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BLAKE2b-256 | 48716e58fbf2d4498b46398a561cf9f761dac45d3634a750d5252463c40a862b |
Hashes for PyRuSH-1.0.8.dev2-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 7ffee821c59b1983b040573d61e7f2f9 |
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BLAKE2b-256 | ffbe9feb1387a20cd6aa356f0c35bda0b94d8f9c83a0d90b93ce7d257740c36f |
Hashes for PyRuSH-1.0.8.dev2-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | bb235c6159f0c512209ad1935c57e2ff |
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BLAKE2b-256 | 97b1f232c26be5291d68d6c837d5b751160c47858739fefa9fac7ab9c5a3eb2d |
Hashes for PyRuSH-1.0.8.dev2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 69407048c1f60915428a719fa9e36cf4 |
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BLAKE2b-256 | 237e487a5fe57249f9507e84558f021bf296444a64163063fd17199ede5132f0 |
Hashes for PyRuSH-1.0.8.dev2-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7a3f9ee8eff2d7abb37f9c1c62bee5ee |
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