A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.8.dev3-cp311-cp311-win_amd64.whl
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MD5 | c681e9176c2ffdbc7ceef45f69183899 |
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MD5 | 4a1ccf4397b12cc441a53cba6df61e5a |
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Hashes for PyRuSH-1.0.8.dev3-cp311-cp311-macosx_10_9_x86_64.whl
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MD5 | d8844b6e9ae3ff46e65e0b652b478ef3 |
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BLAKE2b-256 | b0bd17c42aa1b608cd714218569a5326d78bb9aca574efddd056236e06c5e5af |
Hashes for PyRuSH-1.0.8.dev3-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 0fff2c55dcd3ef5f8ef509ec7375ee91 |
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BLAKE2b-256 | 79fe3ddf523d94b570920462f99c006df1bebb8bcbd1392101f75a624523bf3f |
Hashes for PyRuSH-1.0.8.dev3-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7e030e1c3ab3e80181d72bd4e94f55aa |
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BLAKE2b-256 | 6cb3e38a2b12ec98e62983cf3bcaae197310828295a7a89200fa0603f8d01809 |
Hashes for PyRuSH-1.0.8.dev3-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a305bb78cada522ece126f85ec51267e3797b39d8eeaa1a9f425c9c664b21875 |
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MD5 | 88bbee09b2d49fb4614116ba4da1d070 |
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BLAKE2b-256 | e3d839c3e07abe103dc6c62e96436a31156d7ffd6afcef4c7c4bc871b265c23e |
Hashes for PyRuSH-1.0.8.dev3-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | ff67544c67eac1e963cdf551232df8f90d806abc94194e0e69ad42589266fe94 |
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MD5 | ad592dab44941eb170487b2a52f116c7 |
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BLAKE2b-256 | b2fa61f56d161233c6a70a3e97c49c1d6c3ed40ab0529031fb161fcf0e2cfb5c |
Hashes for PyRuSH-1.0.8.dev3-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 091bdbe944af731773dd1cfee0977ffa |
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BLAKE2b-256 | d2f57cbe13fd408268df5ba6b46d636a5f00acc53b9d27741e1e301a07a0dd50 |
Hashes for PyRuSH-1.0.8.dev3-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 6e4ecac36795ee8ab32066d793a25e9d |
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BLAKE2b-256 | abe4fb4af2a4fd58bd153f5f54b8445ab78022216e9d3d138be7c92a2f746602 |
Hashes for PyRuSH-1.0.8.dev3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | e9af7536a90069405c97f393567bceaff244937fd80d0e3213bfa341c0971cd8 |
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MD5 | a49c5f73bd347dd2ed02f497982ce68a |
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BLAKE2b-256 | ee68915f932bf3c15e3cd9de552826dc875a318add83cc0d1de25f2965d2424a |
Hashes for PyRuSH-1.0.8.dev3-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 9c9e724b614a92f5c2519eaaded1fd870a5a3f8c4e9309fc43310f6f87e763d3 |
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MD5 | 890cbeaefff73bdc46f2466b0546172c |
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BLAKE2b-256 | 909ea2696c41717220b6e7ce97d6bdef41abf5167a449faa0b1b5547d8222442 |
Hashes for PyRuSH-1.0.8.dev3-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 74ac6380e5bbc3006148f1cd3ece371a |
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BLAKE2b-256 | 495e893430bde2f767fbcba287a220a449344f849493eacb1353207386479166 |
Hashes for PyRuSH-1.0.8.dev3-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | a42aae8d77d4f4f402cb33f5830b8b70 |
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Hashes for PyRuSH-1.0.8.dev3-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 08b89b058e801be972e661f2f9076d66047d740f7fdd098c149d2e99c975939b |
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MD5 | ca01b5fc77349f026ef739a661783055 |
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BLAKE2b-256 | 633a4805ffa68e4079f36ba2b23a6be203cf179b5ef6ae01f48cd1c1c5863523 |
Hashes for PyRuSH-1.0.8.dev3-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 467e623aca614525569402b9e0dc7e1e |
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BLAKE2b-256 | ea83c714a3a53b677a7012a52a141762674d503860fa865c9fa9198e88474278 |
Hashes for PyRuSH-1.0.8.dev3-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | c0fb8a51fea3fbaad5536a388c5a0c00 |
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BLAKE2b-256 | eb8c5ae3bf3aa77586dc737785684136ce45e81b21ecc365e21fa59fc967a0ec |
Hashes for PyRuSH-1.0.8.dev3-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | be2e9428bc0ed434e1a235be5c540ee5 |
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Hashes for PyRuSH-1.0.8.dev3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7f15e93ae484d0b8c700b1c021f3e071 |
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BLAKE2b-256 | 52c0cc29f2efe1d324f1ece32a0dda45f61b43c65bf9785cb0747c996ef914b2 |
Hashes for PyRuSH-1.0.8.dev3-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | ee61bf15c213710b6b7ebb0ec945b5ef |
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BLAKE2b-256 | 5543a7103d5f2d4436f538d120e11fc390a0bf62f64519b1b2ce302fc52a2cac |
Hashes for PyRuSH-1.0.8.dev3-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | f1039dabfdad3eb0d518f8692f2b7f35 |
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BLAKE2b-256 | 490e850587c2de57307c4ef4f6348d49cd069bc3f73c67d62c48b5b93c72e143 |
Hashes for PyRuSH-1.0.8.dev3-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | b0e23e3076aa03ad32c0dbce045f94c6 |
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BLAKE2b-256 | b1bdb7967885c296002e0e22afba530a739d6d02c737b65f027d5f1058baee35 |
Hashes for PyRuSH-1.0.8.dev3-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7665dc6f45c78e908a95697aa69ada1c |
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BLAKE2b-256 | 6b9f65377d5bc59b3adc38010a01d90772ba6f23400372785de734bc5950e960 |
Hashes for PyRuSH-1.0.8.dev3-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 5c7190b8c7f3d2222ce6f649e143704c |
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