Pyomic 1.2.9

A python framework library for omics analysis

Pyomic is the fundamental package for multi omics included bulk and single cell analysis with Python.

Directory structure

.
├── Pyomic                  # Main Python package
├── pyomic_guide            # Documentation files
├── sample                  # Some test data
├── LICENSE
└── README.md

Where to get it

Binary installers for the latest released version are available at the pypi

pip install -U Pyomic

Usage

Please checkout the documentations and tutorials at pyomic.readthedocs.io.

Reference

• [1] dynamicTreeCut was originally published by in Bioinformatics
• [2] scDrug was originally published in Computational and Structural Biotechnology Journal
• [3] MOFA was originally published in Genome Biology
• [4] COSG was originally published in Briefings in Bioinformatics
• [5] CellphoneDB was originally published in Nature
• [6] AUCell was originally available in Bioconductor, and we use the script of Pyscenic to instead.
• [7] Bulk2Space was originally available in Nature Communications
• [8] SCSA was originally availabale in Front Genet
• [9] WGCNA was originally avaliable in BMC Bioinformatics
• [10] VIA was originally avaliable in Nature Communications

Contact

• Zehua Zeng ([e-mail])

Other

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