Toolkit to perform regulatory genomics data analysis
Project description
RGT - Regulatory Genomics Toolbox
RGT is an open source python library for analysis of regulatory genomics. RGT is programmed in an oriented object fashion and its core classes provide functionality for handling regulatory genomics data.
This library has been used for implementation of several tools as ChIP-Seq differential peak callers (ODIN and THOR), DNase-Seq footprinting method (HINT) and the visualization tool RGT-Viz.
Quick installation
The quickest and easiest way to get RGT is to to use pip:
pip install RGT
This will install the full RGT suite with all dependencies.
Alternatively, you can clone this repository:
git clone https://github.com/CostaLab/reg-gen.git
or download a specific release, then proceed to manual installation:
cd reg-gen sudo python setup.py install
Detailed installation instructions and basic problem solving can be found at:
http://www.regulatory-genomics.org/rgt/download-installation nn
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