SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution

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SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution

SC2Spa Overview

Install

Install SC2Spa:

conda create -n SC2Spa python=3.9
conda activate SC2Spa
pip install SC2Spa

Analysis for the SC2Spa manuscript

The analysis for the SC2Spa manuscript can be found in this repository. The analysis and related data were also uploaded to Figshare and Zenodo.

Many more to come!

We will update more on our Read the Docs page

News

2023/08/22

SC2Spa is now on BioRXiv! https://www.biorxiv.org/content/10.1101/2023.08.22.554277v1

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1.3.0

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1.2.6

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1.1.6

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