SCIMAP 0.1.2

Single-Cell Image Analysis Package

Single-Cell Image Analysis Package

Scimap is a scalable toolkit for analyzing single-cell imaging data using anndata data structuring framework. It includes preprocessing, visualization, clustering, spatial analysis and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Setup

Requirements

• Python 3.7+

Installation

Install it directly into an activated virtual environment:

$ pip install scimap

Usage

After installation, the package can imported:

$ python
>>> import scimap
>>> scimap.__version__