downloads SRA short reads from either NCBI or EBI and converts them into fastq.gz files
Project description
SRAdownload
Install it via PIP
::
pip install --upgrade SRAdownload
Usage: SRAdownload [OPTIONS] [RUN]...
A simple tool that downloads SRA short reads by their accessions (RUN) from either NCBI or EBI and converts them into fastq.gz files. Version 1.0
Try it with "SRAdownload SRR2223576 SRR2223582"
Options: -f, --folder TEXT Root folder for fetched short reads. Each SRA record will be saved in a sub-folder. DEFAULT: current folder
-s, --source TEXT Sources for reads, change to EBI,NCBI if your connection to EBI is faster. DEFAULT: NCBI,EBI
-h, --help Show this message and exit.
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