Project description

SimTissue

SimTissue is a python package to simulate in silico smFISH experiment. It can generate 2D or 3D tissue with arbitrary RNA profile and cell shape. Beside it can also sample nuclei position from real experiment and RNA profile from scRNA-seq data.

Installation

pip install SimTissue -r requirements.txt

Project details

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0.0.3

May 21, 2024

This version

0.0.2

Dec 26, 2023

0.0.1

Nov 19, 2023

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SimTissue-0.0.2.tar.gz (8.9 kB view hashes)

Uploaded Dec 26, 2023 Source

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Uploaded Dec 26, 2023 Python 3

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