SimpleHMMER

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Overview
=========

SimpleHMMER is just that, a super simple way to run HMMER3 and parse the
output. No biopython, no frills, just parse

Installation
=========

Should be as simple as

pip install SimpleHMMER

Using MetaChecka2000
=========

Running hmmer

from simplehmmer.simplehmmer import HMMERRunner
HR=HMMERRunner(prefix='frode')
HR.search('/path/to/some.hmm', '/path/to/some.fasta', '/path/to/save/to/')

Parsing results

from simplehmmer.simplehmmer import HMMERParser
with open('/path/to/save/to/frode_out.txt', 'r') as fh:
HP = HMMERParser(fh)
while True:
result = HP.next()
if result:
print result
else:
break

Super simple!

Licence and referencing
=========

Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/SimpleHMMER

This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.

Copyright © 2012 Michael Imelfort. See LICENSE.txt for further details.

Metadata

Release files for SimpleHMMER 0.2.3

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Source distribution (sdist)

Source distribution for SimpleHMMER 0.2.3
File	Size	Uploaded	Provenance
SimpleHMMER-0.2.3.tar.gz	18.3 kB	Dec 18, 2012	Without provenance	Details

Release files / SimpleHMMER-0.2.3.tar.gz

Download URL	SimpleHMMER-0.2.3.tar.gz
Size	18.3 kB
Tags	Source
SHA-256 checksum How to use checksums	`a491bec5cb19274994f74de0dcb9bda9ce1d6363a32d4643fc2384a21fe63b00`
BLAKE2b-256 checksum How to use checksums	`c987735e0d65cd471661af0410c036cfca9389450cf25ded804f48009440b7e3`
Upload date	Dec 18, 2012
Uploaded using Trusted Publishing? What is trusted publishing?	No

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