Visualize splice junctions, backsplice junctions (circleRNA) and coverage from RNA-Seq datasets
Project description
# SpliceV #
Visualize coverage, canonical, and backsplice junctions.
![Example plot](https://github.com/flemingtonlab/SpliceV/blob/master/etc/example.png)
## Requirements ##
SpliceV works with Python 2.7 and 3.0+.
## Dependencies ##
* Matplotlib
* Numpy
* pysam
## Installation ##
To install SpliceV:
```
pip install SpliceV
```
Or:
```
git clone https://github.com/flemingtonlab/SpliceV.git
```
## Example ##
To run the example dataset:
```
git clone https://github.com/flemingtonlab/SpliceV.git
cd SpliceV/example
python ../bin/SpliceV -b example.bam -gtf uba2.gtf -g UBA2 -f 5
```
## Authors ##
Created by Nathan Ungerleider and Erik Flemington
Visualize coverage, canonical, and backsplice junctions.
![Example plot](https://github.com/flemingtonlab/SpliceV/blob/master/etc/example.png)
## Requirements ##
SpliceV works with Python 2.7 and 3.0+.
## Dependencies ##
* Matplotlib
* Numpy
* pysam
## Installation ##
To install SpliceV:
```
pip install SpliceV
```
Or:
```
git clone https://github.com/flemingtonlab/SpliceV.git
```
## Example ##
To run the example dataset:
```
git clone https://github.com/flemingtonlab/SpliceV.git
cd SpliceV/example
python ../bin/SpliceV -b example.bam -gtf uba2.gtf -g UBA2 -f 5
```
## Authors ##
Created by Nathan Ungerleider and Erik Flemington
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
SpliceV-0.1.5.tar.gz
(15.5 kB
view hashes)
Built Distribution
SpliceV-0.1.5-py3-none-any.whl
(14.6 kB
view hashes)