A reference-based proteome assmebler for RNA-seq reads
Project description
## StringFix: Brief introduction StringFix is a python3 toolkit for SNV detection, transcriptome and proteome assembly from RNA-Seq reads. It takes aligned reads (in SAM or BAM), optionally with genome fasta and its associated GTF, as input(s) and outputs the following.
transcript expression profile in tsv format
SNV summary in tsv format
transcriptome.fasta
proteome.fasta
One can import the function by adding a line in your script, i.e., import StringFix (as sf) See stringfix.py for example usage of the package
## Contact Send email to syoon@dku.edu for any inquiry on the usages.
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