TCFile 2023.7

Python package for handling TCF data. It works with Tomcube data

TCFile python package

A basic image processing tool of tomocube data.

Installation

pip install TCFile

Use case

from TCFile import TCFile

tcfile = TCFile('test.TCF','3D') # ready for return 3D RI images
print(f"number of snapshots : {len(tcfile)}")

## Usage 1: handling each snapshots (or data)
data = tcfile[0]
print(f"shape of data : {data.shape}")
# or
for data in tcfile:
    # do some operations on the data ...
    pass

TODO

• fluorescence data reader
• TCFile compressor/decompressor for portability
• rich documentation
• rigorous tests
• TCFile writer ?
• TCFile converter ?

Any suggestions and comments are welcome!

Test

# install this package in editable mode
git clone https://github.com/ehgus/TCFile.git
cd TCFile
pip install -e .
# execute pytest
pytest