TCRnumba 0.1.7

some description

Installation

To install on Linux type into the commandline:

pip install TCRnumba

It requires CUDA and is not yet tested for MacOS or Windows.

Usage

In Python you can import

import TCRnumba

Then, test the script, by running the additional commands

import TCRnumba.graph_numba as gn
import TCRnumba.convert_pure as cp
adjacency_sparse = gn.adjacency_matrix(['ABC', 'DEF', 'EFG', 'ABC', 'ABD', 'EEE', 'EEF', 'EFF', 'GGE', 'GAS'], N_part=2, len_xy=5, direct_output=True)
cp.convert_pure(adjacency_sparse, 2, 5)

Use SONIA to create files

sonia-generate --humanTRB -n 1000000 --pre -o pre_example.txt