TrackPal: Tracking Python AnaLyzer
Project description
TrackPal: Tracking Python AnaLyzer
A modular library for the analysis of object trackings in Python with pandas.
Overview
Main features
- Read Imaris / TrackMate files
- Simulate tracks with different motion types
- Compute track feature descriptors (~50 available features)
- Mean squared displacement curves for single tracks and ensembles
- Velocity autocorrelation curves for single tracks and ensembles
- Visualization utilities
For most computations trackpal relies on pandas groupby
and apply
mechanism.
TrackPal
does not track or link objects. It analyzes already tracked objects.
For obtaining object trackings from images or detections see for instance the
excellent projects TrackMate,
trackpy or ilastik
Examples
import trackpal as tp
trj = tp.simulate.brownian_linear(n_tracks=10)
trj.groupby(trj.trackid).apply(
tp.visu.plot_trj, coords=trj.xy, line_fmt=".-",
)
Output:
Track features
- Simulate different motion types and compute track feautres
Installation
- Install Anaconda Python (>=3.6) and create new environment
From PyPi:
pip install trackpal
For development
git clone
this repostiorycd trackpal
pip install -e .
Documentation
Find API documentation on github
Project details
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TrackPal-1.0.0.tar.gz
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TrackPal-1.0.0-py3-none-any.whl
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