Trapalyzer 0.0.5

Automatic feature detection and quantification for in-vitro NETosis experiments plugin for PartSeg

Trapalyzer

Trapalyzer is a PartSeg and napari plugin for automatic feature detection and quantification for in-vitro NET release studies.

Installation

Trapalyzer is a plug-in for the PartSeg image processing. To use Trapalyzer, you first need to install PartSeg. If you use Windows, you can simply download and unpack the PartSeg.zip file - no further installation needed. If you use Linux with a working Python distribution, we recommend installing PartSeg by running pip install PartSeg[all] in the command line.

After you have installed PartSeg, you can install Trapalyzer:

• On Windows, download the ZIP file with the plug-in (see the screenshot below). Unpack the .zip archive and move the Trapalyzer directory (located in Trapalyzer-master/src in the unpacked archive) to the plugins directory in the PartSeg folder.
• On Linux, we recommend installing via pip install Trapalyzer.

Usage examples

In the Tutorial directory you will find instructions on how to use Trapalyzer to analyze an example data set of fluorescence microscopy images.