Skip to main content

VIVO harvester

Project description



pip install VIVOHarvester


git clone
python install


  • Harvest data from Elements (Default)
vivotool -f local.yml -t harvest -d 0
  • Harvest data from Elements a day ago (Current time -1 day)
vivotool -f local.yml -t harvest -d 1
  • Import RDF data into a VIVO instance
vivotool -f local.yml -t ingest
  • Fetch user_map.csv
vivotool -f local.yml -t getuser


vivotool -f local.yml -t getuser -o yourpath/yourfilename

Database creation

  • Create require database
vivotool -f local.yml -t db

Upgrade to newer version

pip uninstall VIVOHarvester
pip install VIVOHarvester==0.1.2 (e.g.)


py.test --cov=vivotool test/
coverage report -m
coverage report

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for VIVOHarvester, version 0.2.2
Filename, size File type Python version Upload date Hashes
Filename, size VIVOHarvester-0.2.2-py3-none-any.whl (42.7 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size VIVOHarvester-0.2.2.tar.gz (23.5 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page