XPRESStools 0.0.1b0

A toolkit for navigating and analyzing gene expression datasets

# 


### A toolkit for navigating and analyzing gene expression datasets

[](https://travis-ci.org/XPRESSyourself/XPRESStools)
[](https://xpresstools.readthedocs.io/en/latest/?badge=latest)

##### Find documentation [here](https://xpressyourself.github.io/XPRESStools/)

-----

### Development Notes:
<b><i>XPRESStools is still in beta production</i></b>

### Citation:
```
Berg, JA (2019). XPRESSyourself suite: Gene expression processing and analysis made easy. https://github.com/XPRESSyourself.
```

### Installation:
```
conda install -c bioconda xpresstools
```

### QuickStart:
```
>>> import pandas as pd
>>> import xpresstools as xp

>>> geo, metadata = xp.get_geo('GSE20916')
>>> geo = xp.rpm(geo)
```

### Important Notes:
Assumes all dataframes are columns=samples and rows=genes (except in certain cases, see documentation for help)

```
>>> geo.head()
name GSM523242 GSM523243 GSM523244 GSM523245 GSM523246 GSM523247 ...
1007_s_at 8.98104 8.59941 8.25395 8.72981 8.70794 8.10693 ...
1053_at 5.84313 6.59168 8.27881 6.64005 4.65107 7.19090 ...
121_at 6.17189 5.73603 5.55673 5.69374 6.77618 5.84524 ...
1294_at 6.97009 6.80003 5.56620 7.43816 7.36375 5.85687 ...
1405_i_at 10.24611 10.13807 8.84743 9.72365 10.42940 9.17510 ...

[5 rows x 145 columns]
```