abeona 0.22.3

No project description provided

abeona v0.22.3

A simple transcriptome assembler based on kallisto and Cortex graphs.

Installation

It is recommended to install abeona and its dependencies into a conda environment.

Conda dependencies

At present, abeona depends on the following conda packages:

• zlib

• nextflow

• kallisto

Manually installable dependencies

Furthermore, abeona needs a working version of Mccortex to be installed in the PATH:

git clone --recursive https://github.com/mcveanlab/mccortex
cd mccortex
make all MAXK=31
make all MAXK=63
# copy all files in bin to a directory in your PATH

Abeona

abeona is distributed on PyPI as a universal wheel and is available on Linux/macOS and Windows, and supports Python 3.6+.

$ pip install abeona

License

abeona is distributed under the terms of the Apache License, Version 2.0.