A PyQt GUI to quickly visualize ABF electrophysiology files
Project description
ABF Explorer
ABF_Explorer
is a simple graphical application for quickly viewing axon binary format (ABF) files from electrophysiology experiments without writing a bunch of boilerplate python/matlab/etc. This graphical tool allows you to quickly scroll through files, read the basic metadata, and take a look at the data.
We use the excellent pyABF package (https://github.com/swharden/pyABF) by Scott W Harden to do the hard work of parsing ABF files.
Use
This is a graphical application for inspecting physiology data in ABF files. ABF Explorer supports Python > 3.7.
Install
pip install abf_explorer
Launch GUI
abf_explorer
Command line options
-d
or --startup-dir
specify path to a directory containing ABF files.
Use:
abf_explorer -d path/to/abfs
Keyboard shorcuts
TAB
will plot the current selectionc
will clear the current plot
Sample data
Sample data (abf
's) can be downloaded from this repository.
Changelog
abf_explorer==0.6
Date: 2021-04-21
Reason: Bump PyQt5 version to fix BigSur GUI failure.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for abf_explorer-0.6-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9665acd6fc583bba487b692c6fecd4ee76ba1e86ca41d98dc52ad1cb72bc1ccd |
|
MD5 | ade1f48aec310e35713abe61885ecb91 |
|
BLAKE2b-256 | 9995b5a8b84795763b68e44bc4c18c89d2ec8c1a53e130801ac99949a4f2025d |