Python library for NCBI assession2tax file querying.
Project description
accession2taxid: saving NCBI accession2taxid file to database for querying
installation
pip install accession2taxid
usage
SQLite
saving
accession2taxid sqlite -i prot.accession2taxid
querying
from accession2taxid import get_sqlite_scoped_session, Accession2Taxid
with get_sqlite_scoped_session() as session:
session.query(Accession2Taxid).filter_by(
accession='A0A0A0MTA4'
)
session.query(Accession2Taxid).filter_by(
accession_version='A0A0A0MTA4.2'
)
session.query(Accession2Taxid).filter_by(
gi='1679377559'
)
Redis
saving
accession2taxid redis -i prot.accession2taxid
querying
from accession2taxid import REDIS_KEY, get_redis_conn
with get_redis_conn() as conn:
conn.hget(REDIS_KEY, 'xxx')
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