actinfrictionpy 1.0.0

Python package for the dynamics analysis of the paper "Constriction of actin rings by passive crosslinker".

Supporting python modules for dynamics analysis in "Constriction of actin rings by passive crosslinkers"

Python package for the dynamics analysis of Ref. 1.

This package is primarily for creating plots for the solutions of differential equations that are solved with another package, (ActinFriction.jl).

Installation

This package was developed and used on Linux. It is available on the PyPI respository. It can be installed by running

pip install actinfrictionpy

If you are not using a virtual environment, the --user flag may be used instead to install it locally to the user. To install directly from this repository, run

python -m build
pip install dist/actinfrictionpy-[current version]-py3-none-any.whl

To run the above, it may be necessary to update a few packages:

python3 -m pip install --upgrade pip setuptools wheel

For more information on building and installing python packages, see the documentation from the Python Packaging Authority.

References

[1] A. Cumberworth and P. R. ten Wolde, Constriction of actin rings by passive crosslinkers, arXiv:2203.04260 [physics.bio-ph].

Links

Python Packaging Authority

ActinFriction.jl

Replication package Ref. 1