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afids-NN
Utilizing the anatomical fiducals framework to identify other salient brain regions and automatic localization of anatomical fiducials using neural networks
Processing data for training
Convert3D
Anatomical landmark data (AFIDs)
Convert3D:
- .fcsv -> threshold image -> landmark distance map (could be considered probability map)
- distance map used for training
Structural T1w imaging
Convert3D:
- brainmask.nii -> 3D patches sampled at x voxels
- matching of distance maps and anatomical imaging patches is crucial for proper training
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