A library to convert AIM image files to numpy arrays
Project description
aim2numpy
aim2numpy
is a Python library designed to convert AIM files, specifically CT scan data from Scanco, into numpy arrays.
Installation
You can install the library using pip:
pip install aim2numpy
Usage
Here's a basic example of how to use the library:
import aim2numpy
mynumpy = aim2numpy.extract("myaimfile.aim")
AIM File Format
The AIM file format is used by Scanco Medical for storing CT scan data. These files contain volumetric data that can be used for various analyses in medical imaging and research.
Features
- Easy Conversion: Convert AIM files to numpy arrays with a single function call.
- Compatibility: Works with CT scan data from Scanco.
- Extensible: Easily integrate with other Python libraries for further data processing and analysis.
Example
import aim2numpy
import matplotlib.pyplot as plt
# Extract the numpy array from the AIM file
ct_scan_data = aim2numpy.extract("myaimfile.aim")
# Display a slice of the CT scan data
plt.imshow(ct_scan_data[:, :, ct_scan_data.shape[2] // 2], cmap='gray')
plt.title('CT Scan Slice')
plt.show()
Requirements
- numpy
- struct
- matplotlib
Installation for Development
If you want to install the library for development purposes, you can clone the repository and install it locally:
git clone https://github.com/Alexhal9000/aim2numpy.git
cd aim2numpy
pip install -e .
Running Tests
To run the tests, use the following command:
python -m unittest discover tests
Contributing
Contributions are welcome! Please open an issue or submit a pull request on GitHub.
License
This project is licensed under the MIT License. See the LICENSE
file for details.
Contact
For any questions or inquiries, please contact your.email@example.com.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file aim2numpy-0.1.tar.gz
.
File metadata
- Download URL: aim2numpy-0.1.tar.gz
- Upload date:
- Size: 4.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.1 CPython/3.10.12
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | dbf03d51160c2cd46b4325b3a892ee666db2f1891fb8ebb5b66439b3527a2399 |
|
MD5 | 21582c0e6408a2f205777d876a8dd228 |
|
BLAKE2b-256 | a7fe7be6b11afeee6ab0f4d5afc6f68074753f17b1a5cb1643c7eb2864d6e497 |
File details
Details for the file aim2numpy-0.1-py3-none-any.whl
.
File metadata
- Download URL: aim2numpy-0.1-py3-none-any.whl
- Upload date:
- Size: 4.7 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.1 CPython/3.10.12
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 7b0782efa716470faa2936b5e9e4193851c2f2df468911824e2cb0660403469a |
|
MD5 | 8fec89e506ec6b3f9166e72ab13f389a |
|
BLAKE2b-256 | 5f7c0c6ce1e929573f47f29028aef9ba658f6a836674a3d670ed1f8e5dc576ac |