A pipeline for mapping insertion mutants from whole genome shotgun data
Project description
This package provides software for identifying the genome insertion points random mutants generated by insertional mutagenesis, which have been sequenced as a pool.
The package will install two executables: aimhii and extract_chimeras.
aimhii will run a full analysis starting from sequence data (a FASTQ file), genome sequence, and insert sequence. extract_chimeras just runs the last step of this analysis, assuming you already have a BAM file and a concatenated genome-insert sequence.
For details see the project website http://granek.bitbucket.org/projects/aimhii/
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