alkymi 0.0.3

alkymi - Pythonic task automation

alkymi ⚗️

Pythonic task automation

alkymi uses Python's basic building blocks to describe a directed-acyclic-graph (DAG) of computation, and adds a layer of caching to only evaluate functions when inputs have changed.

The key idea behind alkymi is to have your data or validation pipeline defined in the same language as the actual pipeline steps, allowing you to use standard Python tools (unit testing, linting, type checkers) to check the correctness of your full pipeline. No more make dataset!

All alkymi tasks (recipes) are created using references to other alkymi recipes. There's no magic tying together inputs and outputs based on file names, regexes, etc. - only function calls where alkymi provides the input arguments based on outputs further up the DAG.

NOTE: alkymi is very much in the experimental alpha stage, and probably shouldn't be used for anything critical. Performance optimizations are still TODO, and only single-threaded evaluation is possible at this point.

Sample Code

Downloading and parsing the MNIST handwritten character dataset w/ caching (see examples/mnist for full code)

import alkymi as alk

@alk.recipe()
def urls() -> List[str]:
    # Return URLs of various parts of the dataset - alkymi will cache these as a list of strings
    train_images_url = "http://yann.lecun.com/exdb/mnist/train-images-idx3-ubyte.gz"
    train_labels_url = "http://yann.lecun.com/exdb/mnist/train-labels-idx1-ubyte.gz"
    test_images_url = "http://yann.lecun.com/exdb/mnist/t10k-images-idx3-ubyte.gz"
    test_labels_url = "http://yann.lecun.com/exdb/mnist/t10k-labels-idx1-ubyte.gz"
    return [train_images_url, train_labels_url, test_images_url, test_labels_url]


@alk.foreach(urls)
def download_gzips(url: str) -> bytes:
    # Download each gzip file as raw bytes - alkymi will cache these to binary files
    # This will run once per URL, and only if the URL has changed since the last evaluation
    return urllib.request.urlopen(url).read()


@alk.foreach(download_gzips)
def parse_gzip_to_arrays(data: bytes) -> np.ndarray:
    # Unzip binary data and parse into numpy arrays - alkymi will cache the numpy arrays
    # This will run once per blob of input data, and only if the binary data has changed since the last evaluation
    with io.BytesIO(data) as f:
        with gzip.open(f) as gzip_file:
            return parse_idx(gzip_file)  # parse_idx definition left out for brevity (see examples/mnist)


# Evaluate 'parse_gzip_to_arrays' and all dependencies
# On subsequent evaluations, the final numpy arrays will be read from the cache and returned immediately - unless one of
# the recipes is marked dirty (if inputs have changed, or the recipe function itself has changed) - in that case, alkymi
# will do the minimum amount of work to bring the pipeline up-to-date, and then return the final numpy arrays 
train_images, train_labels, test_images, test_labels = parse_gzip_to_arrays.brew()

Or, if you need to wrap existing functions, you can simply do:

import alkymi as alk

download_archives = alk.foreach(urls)(download_gzips)
parse_arrays = alk.foreach(download_archives)(parse_gzip_to_arrays)
train_images, train_labels, test_images, test_labels = parse_arrays.brew()

Documentation

TODO(mathias): Add a readthedocs.org page

Installation

Install via pip:

pip install --user alkymi

Or clone and install directly from source

git clone https://github.com/MathiasStokholm/alkymi.git
cd alkymi
pip install --user .

Or install using pip and github

pip install --user git+https://github.com/MathiasStokholm/alkymi.git

Testing

After installing, you can run the test suite:

python3 lab.py brew test

License

alkymi is licensed under The MIT License as found in the LICENSE.md file