alphabetsoup -- fixes problems in protein FASTA files.
Project description
al·pha·bet soup /ˈalfəˌbet so͞op/Submit noun INFORMAL incomprehensible or confusing language, typically containing many abbreviations or symbols.
alphabetsoup fixes problems with protein FASTA files: +————————–+————————+ | Problem | Fix | +————————–+————————+ | Unknown character | Replaces with ‘X’ | +————————–+————————+ | Stop/ambigous at ends | Trims | +————————–+————————+ | Stop/ambiguous in middle | Optionally fragments | +————————–+————————+ | Too short | Deletes record | +————————–+————————+
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