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Command line utilities for running workflows

Project description

altocumulus

Command line utilities for running workflows on Terra including:

  • Add/update methods in Terra.
  • Generate a Terra WDL input.json stub.
  • Run a Terra method. Replace local file paths with workspace Google Cloud bucket URLs. Automatically upload referenced files to workspace Google bucket.
  • Bulk add/delete methods in Terra.
  • Parse monitoring log files to determine optimal instance type and disk space.

Installation

git clone https://github.com/klarman-cell-observatory/altocumulus.git
cd altocumulus
pip install -e .

Usage

  • Type alto for a list of all commands.

Project details


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Files for altocumulus, version 1.0.0
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Supported by

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