Home_made machinery for image analysis
Project description
Identifying neurite by RRS method
This repository contains code for implementing the RRS method initially described in the paper:
https://doi.org/10.1038/s41598-019-39962-0
https://www.nature.com/articles/s41598-019-39962-0
Random-Reaction-Seed Method for Automated Identification of Neurite Elongation and Branching
by Alvason Li (2019)
(is still working on this repository, a new AlvaHmm package will be ready soon...)
Overview
tracing neurite in microfuidic device
Prerequisites
This code is written and tested in Python 3.6.5. The required Python libaries are:
- NumPy
- SciPy
- Matplotlib
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