amltk 1.12.1

AutoML Toolkit: a toolkit for building automl system

AutoML Toolkit

A framework for building an AutoML System. The toolkit is designed to be modular and extensible, allowing you to easily swap out components and integrate your own. The toolkit is designed to be used in a variety of different ways, whether for research purposes, building your own AutoML Tool or educational purposes.

We focus on building complex parametrized pipelines easily, providing tools to optimize these pipeline parameters and lastly, providing tools to schedule compute tasks on a variety of different compute backends, without the need to refactor everything, once you swap out any one of these.

The goal of this toolkit is to drive innovation for AutoML Systems by:

1. Allowing concise research artifacts that can study different design decisions in AutoML.
2. Enabling simple prototypes to scale to the compute you have available.
3. Providing a framework for building real and robust AutoML Systems that are extensible by design.

Please check out our documentation for more:

• Documentation - The homepage
• Guides - How to use the Pipelines, Optimizers and Schedulers in a walkthrough fashion.
• Reference - A short-overview reference for the various components of the toolkit.
• Examples - A collection of examples for using the toolkit in different ways.
• API - The full API reference for the toolkit.

Installation

To install AutoML Toolkit (amltk), you can simply use pip:

pip install amltk

[!TIP] We also provide a list of optional dependencies which you can install if you intend to use them. This allows the toolkit to be as lightweight as possible and play nicely with the tools you use.

• pip install amltk[notebook] - For usage in a notebook
• pip install amltk[sklearn] - For usage with scikit-learn
• pip install amltk[smac] - For using SMAC as an optimizer
• pip install amltk[optuna] - For using Optuna as an optimizer
• pip install amltk[pynisher, threadpoolctl, wandb] - Various plugins for running compute tasks
• pip install amltk[cluster, dask, loky] - Different compute backends to run from

Install from source

To install from source, you can clone this repo and install with pip:

git clone [e-mail]:automl/amltk.git
pip install -e amltk  # -e for editable mode

If planning to contribute, you can install the development dependencies but we highly recommend checking out our contributing guide for more.

pip install -e "amltk[dev]"

Features

Here's a brief overview of 3 of the core components from the toolkit:

Pipelines

Define parametrized machine learning pipelines using a fluid API:

from sklearn.ensemble import RandomForestClassifier
from sklearn.impute import SimpleImputer
from sklearn.preprocessing import OneHotEncoder
from sklearn.svm import SVC

from amltk.pipeline import Choice, Component, Sequential

pipeline = (
    Sequential(name="my_pipeline")
    >> Component(SimpleImputer, space={"strategy": ["mean", "median"]})  # Choose either mean or median
    >> OneHotEncoder(drop="first")  # No parametrization, no problem
    >> Choice(
        # Our pipeline can choose between two different estimators
        Component(
            RandomForestClassifier,
            space={"n_estimators": (10, 100), "criterion": ["gini", "log_loss"]},
            config={"max_depth": 3},
        ),
        Component(SVC, space={"kernel": ["linear", "rbf", "poly"]}),
        name="estimator",
    )
)

# Parser the search space with implemented or you custom parser
search_space = pipeline.search_space(parser="configspace")
config = search_space.sample_configuration()

# Configure a pipeline
configured_pipeline = pipeline.configure(config)

# Build the pipeline with a build, no amltk code in your built model
model = configured_pipeline.build(builder="sklearn")

Optimizers

Optimize your pipelines using a variety of different optimizers, with a unified API and a suite of utility for recording and taking control of the optimization loop:

from amltk.optimization import Trial, Metric, History

pipeline = ...
accuracy = Metric("accuracy", maximize=True, bounds=(0. 1))
inference_time = Metric("inference_time", maximize=False)

def evaluate(trial: Trial) -> Trial.Report:
    model = pipeline.configure(trial.config).build("sklearn")

    try:
        # Profile the things you'd like
        with trial.profile("fit"):
            model.fit(...)

    except Exception as e:
        # Generate reports from exceptions easily
        return trial.fail(exception=e)

    # Record anything else you'd like
    trial.summary["model_size"] = ...

    # Store whatever you'd like
    trial.store({"model.pkl": model, "predictions.npy": predictions}),
    return trial.success(accuracy=0.8, inference_time=...)

# Easily swap between optimizers, without needing to change the rest of your code
from amltk.optimization.optimizers.smac import SMACOptimizer
from amltk.optimization.optimizers.smac import OptunaOptimizer
import random

Optimizer = random.choice([SMACOptimizer, OptunaOptimizer])
smac_optimizer = Optimizer(space=pipeline, metrics=[accuracy, inference_time], bucket="results")


# You decide how your optimization loop should work
history = History()
for _ in range(10):
    trial = optimizer.ask()
    report = evaluate(trial)
    history.add(report)
    optimizer.tell(report)

print(history.df())

[!TIP] Check out our integrated optimizers or integrate your own using the very same API we use!

Scheduling

Schedule your optimization jobs or AutoML tasks on a variety of different compute backends. By leveraging compute workers and asyncio, you can easily scale your compute needs, react to events as they happen and swap backends, without needing to modify your code!

from amltk.scheduling import Scheduler

# Create a Scheduler with a backend, here 4 processes
scheduler = Scheduler.with_processes(4)
# scheduler = Scheduler.with_SLURM(...)
# scheduler = Scheduler.with_OAR(...)
# scheduler = Scheduler(executor=my_own_compute_backend)

# Define some compute and wrap it as a task to offload to the scheduler
def expensive_function(x: int) -> float:
    return (2 ** x) / x

task = scheduler.task(expensive_function)

numbers = range(-5, 5)
results = []

# When the scheduler starts, submit 4 tasks to the processes
@scheduler.on_start(repeat=4)
def on_start():
    n = next(numbers)
    task.submit(n)

# When the task is done, store the result
@task.on_result
def on_result(_, result: float):
    results.append(result)

# Easy to incrementently add more functionallity
@task.on_result
def launch_next(_, result: float):
    if (n := next(numbers, None)) is not None:
        task.submit(n)

# React to issues when they happen
@task.on_exception
def stop_something_went_wrong(_, exception: Exception):
    scheduler.stop()

# Start the scheduler and run it as you like
scheduler.run(timeout=10)

# ... await scheduler.async_run() for servers and real-time applications

[!TIP] Check out our integrated compute backends or use your own!

Extra Material

• AutoML Fall School 2023 Colab