Python package for calculating scores from ancnchor or modifier screens
Project description
anchors
Python package for calculating scores from ancnchor or modifier screens
Free software: MIT license
Documentation: https://anchors.readthedocs.io.
Tutorial
To install:
$ pip install anchors
Basic Usage
import pandas as pd
from anchors import get_guide_residuals, get_gene_residuals
lfc_df = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/anchor_screen_parp_lfcs/master/parp_example_lfcs.csv')
refernce_condition_df = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/anchor_screen_parp_lfcs/master/parp_example_mapping.csv')
guide_residuals, model_info, model_fit_plots = get_guide_residuals(lfc_df, refernce_condition_df)
guide_mapping_df = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/anchor_screen_parp_lfcs/master/brunello_guide_map.csv')
gene_residuals = get_gene_residuals(guide_residuals, guide_mapping_df)
Features
TODO
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2020-09-21)
First release on PyPI.
0.3.0 (2020-09-21)
Calculate guide and gene residuals.
Project details
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