ancientMetagenomeDirCheck 1.0

Performs validity check of ancientMetagenomeDir datasets

AncientMetagenomeDirCheck

A python package to check AncientMetagenomeDir.

AncientMetagenomeDirCheck will verify a dataset, in tabular format, against a json schema.

Install

From PyPI using pip

pip install ancientcetagenomedircheck

The latest development version, directly from GitHub

pip install --upgrade --force-reinstall git+https://github.com/SPAAM-workshop/AncientMetagenomeDirCheck.git

Documentation

$ ancientMetagenomeDirCheck --help
Usage: ancientMetagenomeDirCheck [OPTIONS] DATASET SCHEMA

  ancientMetagenomeDirCheck: Performs validity check of ancientMetagenomeDir datasets
  Author: Maxime Borry
  Contact: <borry[at]shh.mpg.de>
  Homepage & Documentation: github.com/maxibor/ancientMetagenomeDirCheck

  DATASET: path to tsv file of dataset to check
  SCHEMA: path to JSON schema file

Options:
  --version  Show the version and exit.
  --help     Show this message and exit.