ancientMetagenomeDirCheck 1.2.1

Performs validity check of ancientMetagenomeDir datasets

AncientMetagenomeDirCheck

A python package to check AncientMetagenomeDir.

AncientMetagenomeDirCheck will verify a dataset, in tabular format, against a json schema.

Install

From PyPI using pip

pip install ancientMetagenomeDirCheck

The latest development version, directly from GitHub

pip install --upgrade --force-reinstall git+https://github.com/SPAAM-workshop/AncientMetagenomeDirCheck.git

Documentation

$ ancientMetagenomeDirCheck --help
Usage: ancientMetagenomeDirCheck [OPTIONS] DATASET SCHEMA

  ancientMetagenomeDirCheck: Performs validity check of ancientMetagenomeDir datasets
  Author: Maxime Borry
  Contact: <borry[at]shh.mpg.de>
  Homepage & Documentation: github.com/spaam-workshop/ancientMetagenomeDirCheck

  DATASET: path to tsv file of dataset to check
  SCHEMA: path to JSON schema file

Options:
  --version        Show the version and exit.
  -v, --validity   Turn off schema checking.
  -d, --duplicate  Turn off line duplicate checking.
  -a, --accession  Turn off accession duplicate checking.
  --help           Show this message and exit.