Performs validity check of ancientMetagenomeDir datasets
Project description
AncientMetagenomeDirCheck
A python package to check AncientMetagenomeDir.
AncientMetagenomeDirCheck will verify a dataset, in tabular format, against a json schema (and some other checks...).
Install
From PyPI using pip
pip install ancientMetagenomeDirCheck
The latest development version, directly from GitHub
pip install --upgrade --force-reinstall git+https://github.com/SPAAM-workshop/AncientMetagenomeDirCheck.git
Documentation
$ ancientMetagenomeDirCheck --help
Usage: ancientMetagenomeDirCheck [OPTIONS] DATASET SCHEMA
ancientMetagenomeDirCheck: Performs validity check of ancientMetagenomeDir datasets
Author: Maxime Borry
Contact: <borry[at]shh.mpg.de>
Homepage & Documentation: github.com/spaam-workshop/ancientMetagenomeDirCheck
DATASET: path to tsv file of dataset to check
SCHEMA: path to JSON schema file
Options:
--version Show the version and exit.
-v, --validity Turn on schema checking.
-d, --duplicate Turn on line duplicate line checking.
-i, --doi Turn on DOI duplicate checking.
-m, --markdown Output is in markdown format
-dc, --duplicated_entries TEXT Commma separated list of columns to check
for duplicated entries
--help Show this message and exit.
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