annex-dataproxy 1.0.0rc1

git annex support for Ebrains Data Proxy

git-annex-remote-dataproxy

This git annex external remote extension uses AnnexRemote to talk to EBRAINS Data Proxy so that you can use EBRAINS Collaboratory buckets as Datalad siblings.

Install

pip install requests annexremote and put the git-annex-remote-dataproxy script somewhere on your $PATH.

Usage

create a dataset

$ datalad create pdfdata
[INFO   ] Creating a new annex repo at /home/duke/repo/pdfdata 
[INFO   ] scanning for unlocked files (this may take some time) 
create(ok): /home/duke/repo/pdfdata (dataset)
$ cd pdfdata/
$ rsync -ra /home/duke/Nextcloud/Work/PDFs/ ./
$ datalad save
add(ok): 1107.0903 Montbrio Pazo - Stuart Landau.pdf (file)                                          
  [199 similar messages have been suppressed; disable with datalad.ui.suppress-similar-results=off]  
save(ok): . (dataset)                                                                                
action summary:                                                                                      
  add (ok: 209)
  save (ok: 1)

tell the dataproxy remote our token and what bucket & prefix to use

$ export EBRAINS_TOKEN=$EBRAINS_TOKEN
$ export BUCKET_NAME=insference
$ export BUCKET_PATH=pdfs-annex

create the annex remote and datalad push --to it

$ git annex initremote insference type=external externaltype=dataproxy encryption=none
initremote insference ok
(recording state in git...)
$ datalad push --to insference
copy(ok): 15009.full.pdf (file) [to insference...]                                                   
  [193 similar messages have been suppressed; disable with datalad.ui.suppress-similar-results=off]  
action summary:                                                                                      
  copy (notneeded: 6, ok: 203)
$ which git-annex-remote-dataproxy
/home/duke/repo/datalad-dataproxy/git-annex-remote-dataproxy

Status

• sloppy proof of concept
• git annex testremote passes
• PyPI package for easier install
• better mechanism for specifying bucket & prefix