Package to compute features of traces from action potential models
Project description
Action Potential features
ap_features
is package for computing features of action potential traces. This includes chopping, background correction and feature calculations.
Parts of this library is written in C
and numba
and is therefore highly performant. This is useful if you want to do feature calculations on a large number of traces.
Install
Install the package with pip
python -m pip install ap_features
See installation instructions for more options.
Available features
The list of currently implemented features are as follows
- Action potential duration (APD)
- Corrected action potential duration (cAPD)
- Decay time (Time for the signal amplitude to go from maxium to (1 - a) * 100 % of maximum)
- Time to peak (ttp)
- Upstrok time (time from (1-a)*100 % signal amplitude to peak)
- Beating frequency
- APD up (The duration between first intersections of two APD lines)
- Maximum relative upstroke velocity
- Maximum upstroke velocity
- APD integral (integral of the signals above the APD line)
Documentation
Documentation is hosted at GitHub pages: https://computationalphysiology.github.io/ap_features/
Note that the documentation is written using jupyterbook
and contains an interactive demo
License
- Free software: GNU General Public License v3
Source Code
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