WebApollo API library
Project description
Apollo is a Python library for interacting with WebApollo
Examples
from apollo import WebApolloInstance
wa = WebApolloInstance('https://fqdn/apollo', 'jane.doe@fqdn.edu', 'password')
orgs = wa.organisms.add_organism(
"Yeast",
"/path/to/jbrowse/data",
genus='Saccharomyces',
species='cerevisiae',
public=False
)
# Give webapollo a second to process the uploaded organism.
time.sleep(1)
# Then add yourself to permission list
data = wa.users.update_organism_permissions(
"jane.doe@fqdn.edu",
"Yeast",
write=True,
export=True,
read=True,
)
Or with the new Arrow client:
$ arrow groups create_group university
{
"publicGroup": false,
"class": "org.bbop.apollo.UserGroup",
"name": "university",
"users": null,
"id": 558319
}
$ arrow users get_users | \
jq '.[] | select(.username | contains("@tamu.edu")) | .username' | \
xargs -n1 arrow users add_to_group university
History
- 3.0
“Arrow” CLI utility
More pythonic API and many workarounds for Apollo bugs or oddities
Complete package restructure
Nearly all functions renamed
- 2.0
Galaxy Functions
TTL Cache to work around Galaxy’s behaviour
Status and Canned* Clients from [@abretaud](https://github.com/abretaud)
- 1.0
Initial release
License
Available under the MIT License
Project details
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