appletree 0.3.0

A high-Performance Program simuLatEs and fiTs REsponse of xEnon.

Appletree

A high-Performance Program simuLatEs and fiTs REsponse of xEnon.

Installation and Set-Up

Regular installation:

With cpu support:

pip install appletree[cpu]

With CUDA Toolkit 11.2 support:

pip install appletree[cuda112] -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html

With CUDA Toolkit 12.1 support:

pip install appletree[cuda121] -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html

Developer setup:

Clone the repository:

git clone https://github.com/XENONnT/appletree
cd appletree

To install the package and requirements in your environment, replace pip install appletree[*] to python3 -m pip install .[*] --user in the above pip commands.

To install appletree in editable mode, insert --editable argument after install in the above pip install or python3 -m pip install commands.

For example, to install in your environment and in editable mode with CUDA Toolkit 12.1 support:

python3 -m pip install --editable .[cuda121] --user -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html

Then you are now good to go!

Usage

The best way to start with the appletree package is to have a look at the tutorial notebooks.

Contributing

Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.

Please make sure to update tests as appropriate.

v0.3.0 / 2023-08-31

• Fix function name to simulate_weighted_data, nothing else changed by @dachengx in https://github.com/XENONnT/appletree/pull/99
• Stop jax from preallocating memory by @dachengx in https://github.com/XENONnT/appletree/pull/100
• fix meshgrid binning by @hoetzsch in https://github.com/XENONnT/appletree/pull/101
• Binning is not required by Component by @dachengx in https://github.com/XENONnT/appletree/pull/103
• Upper clipping on binomial randgen in normal approx by @xzh19980906 in https://github.com/XENONnT/appletree/pull/107
• Rename fake maps by @xzh19980906 in https://github.com/XENONnT/appletree/pull/106
• Update fake maps filenames by @dachengx in https://github.com/XENONnT/appletree/pull/108
• Skip mongo DB when finding files by @xzh19980906 in https://github.com/XENONnT/appletree/pull/111
• Raise error if file does not exist by @xzh19980906 in https://github.com/XENONnT/appletree/pull/110
• Rename lce to correction by @dachengx in https://github.com/XENONnT/appletree/pull/109
• Add function to check the usage of configs, check_unused_configs by @dachengx in https://github.com/XENONnT/appletree/pull/112
• Proposal to use pre-commit for continuous integration by @dachengx in https://github.com/XENONnT/appletree/pull/113

New Contributors

• @hoetzsch made their first contribution in https://github.com/XENONnT/appletree/pull/101

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.3...v0.3.0

v0.2.3 / 2023-05-29

• Add pip install user by @dachengx in https://github.com/XENONnT/appletree/pull/96
• Installation with various extras_requires for different CUDA support by @dachengx in https://github.com/XENONnT/appletree/pull/97

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.2...v0.2.3

v0.2.2 / 2023-05-25

• Stop using MANIFEST.in, move to a modern way of file system configuration by @dachengx in https://github.com/XENONnT/appletree/pull/94

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.1...v0.2.2

v0.2.1 / 2023-05-22

• Change variables s1 s2 to s1_area s2_area by @dachengx in https://github.com/XENONnT/appletree/pull/86
• Remove duplicated import pd by @xzh19980906 in https://github.com/XENONnT/appletree/pull/87
• Generate number of events in the defined ROI by @dachengx in https://github.com/XENONnT/appletree/pull/88
• Update DOI link by @dachengx in https://github.com/XENONnT/appletree/pull/89
• Loosen requirement after beta phase and specify jax find-links by @dachengx in https://github.com/XENONnT/appletree/pull/90
• Update notebooks by @dachengx in https://github.com/XENONnT/appletree/pull/91
• Add more tests by @dachengx in https://github.com/XENONnT/appletree/pull/92

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.2.0...v0.2.1

v0.2.0 / 2023-03-15

• Add NESTv2 yields parameterization and literature constrain by @dachengx in https://github.com/XENONnT/appletree/pull/82
• Add uncertainty on electron lifetime by @dachengx in https://github.com/XENONnT/appletree/pull/83
• Add NESTv2 NR parameters of quanta distribution's width by @dachengx in https://github.com/XENONnT/appletree/pull/85

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.1.0...v0.2.0

v0.1.0 / 2023-02-12

• Add corner as dependency by @dachengx in https://github.com/XENONnT/appletree/pull/55
• Add .h5 backend to store MCMC results by @dachengx in https://github.com/XENONnT/appletree/pull/57
• Add document by @xzh19980906 in https://github.com/XENONnT/appletree/pull/61
• More docs by @xzh19980906 in https://github.com/XENONnT/appletree/pull/62
• Deduce and compile codes to generate Ly & Qy curve by @dachengx in https://github.com/XENONnT/appletree/pull/60
• Convert PDF spectrum to CDF by default by @xzh19980906 in https://github.com/XENONnT/appletree/pull/72
• Add R dimension for template generation by @xzh19980906 in https://github.com/XENONnT/appletree/pull/74
• Use specific config for certain llh by @dachengx in https://github.com/XENONnT/appletree/pull/78
• Config can read map and assign itself a mapping function by @dachengx in https://github.com/XENONnT/appletree/pull/79
• Stricter needed parameters check and save meta data to samples by @dachengx in https://github.com/XENONnT/appletree/pull/80
• Irregular binning option in likelihood by @xzh19980906 in https://github.com/XENONnT/appletree/pull/81

Full Changelog: https://github.com/XENONnT/appletree/compare/v0.0.0...v0.1.0

v0.0.0 / 2022-10-13

• Add more notebooks by @dachengx in https://github.com/XENONnT/appletree/pull/52
• Introduce numpyro as dependency by @dachengx in https://github.com/XENONnT/appletree/pull/53
• Try upload to pypi by @dachengx in https://github.com/XENONnT/appletree/pull/54

Full Changelog: https://github.com/XENONnT/appletree/commits/v0.0.0