A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
Verified details
These details have been verified by PyPIProject links
GitHub Statistics
Maintainers
Project description
arnie
Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.
Documentation
Install
arnie is available on PyPI.
pip install arnie
Repo Organization
src/arnie: source code for the arnie package.
docs: docsify-based markdown documentation for the arnie package.
tests: unit tests
notebooks: example jupyter notebooks with usage.
scripts: scripts for processing sequences in batch.
parameter_files: dir of various parameter files for packages, put here out of convenience.
(c) 2024 Leland Stanford Jr University Authors: Hannah Wayment-Steele
Project details
Verified details
These details have been verified by PyPIProject links
GitHub Statistics
Maintainers
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file arnie-0.2.1.tar.gz.
File metadata
- Download URL: arnie-0.2.1.tar.gz
- Upload date:
- Size: 41.8 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.1 CPython/3.12.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 73f6df70b19e691a41bad14c888f8189a04955f1da0882b5877e57629ba7adf2 |
|
| MD5 | a804cdd99ca245a1fd1513f497294e04 |
|
| BLAKE2b-256 | b3c646ada18617929d3d60bca977bec50db7b381fbec2169cf5dd16824294891 |
File details
Details for the file arnie-0.2.1-py3-none-any.whl.
File metadata
- Download URL: arnie-0.2.1-py3-none-any.whl
- Upload date:
- Size: 40.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.1 CPython/3.12.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 1ca1476a58bbd1f958c652a6ac8d23668955f04215029d9263905063bef75be6 |
|
| MD5 | 4ab6f97f006bbc09705d0d07499c055d |
|
| BLAKE2b-256 | 889a0584cfd436ca414e928f5a7cf98c0a5e58ccc880c24fb0caa1c6631ce078 |
