A comprehensive toolkit for alternative splicing analysis
Project description
What is ASTK?
ASTK is a command-line software for comprehensive alternative splicing analysis including:
- characterizing distribution and expression patterns of alternative splicing events
- systematically analyzing functional effects of AS events at the gene- and exon-level respectively
- dissecting out splicing-associated sequence features and epigenetic marks
- inferring the splicing regulatory code for each type of AS.
Documentation
The documentation for ASTK is available on astk-doc.
How to cite
Huang, S., He, J., Yu, L., Guo, J., Jiang, S., Sun, Z., Cheng, L., Chen, X., Ji, X. and Zhang, Y. (2024), ASTK: A Machine Learning-Based Integrative Software for Alternative Splicing Analysis. Adv. Intell. Syst. 2300594. https://doi.org/10.1002/aisy.202300594
How to contact
- Shenghui Huang (hsh-me@outlook.com)
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