Skip to main content

To stat the counts and percentage of each base in fasta file

Project description

atgcN_count

1 Introduction

atgcN_count is a tool to stat the counts and percentage of each base in fasta file.

2 Installation

pip install atgcN_count

There will be a command atgcN_count created under the same directory as your pip command.

3 Usage

usage: atgcN_count[-h] [-i <file>] [-v] [-d <int>] [-N]

To stat the counts of each base in a fasta file.

optional arguments:
  -h, --help  show this help message and exit
  -i <file>   input fasta file
  -v          also output statistics for each sequence [False]
  -d <int>    decimals for output result [2]
  -N          do not take non-ATGC bases into account when caculate percentage
              [False]

Author

Guanliang MENG

Citation

Currently I have no plan to publish atgcN_count.

Project details


Release history Release notifications

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
atgcN_count-0.0.1.tar.gz (15.6 kB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page