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To stat the counts and percentage of each base in fasta file

Project description

atgcN_count

1 Introduction

atgcN_count is a tool to stat the counts and percentage of each base in fasta file.

2 Installation

pip install atgcN_count

There will be a command atgcN_count created under the same directory as your pip command.

3 Usage

usage: atgcN_count[-h] [-i <file>] [-v] [-d <int>] [-N]

To stat the counts of each base in a fasta file.

optional arguments:
  -h, --help  show this help message and exit
  -i <file>   input fasta file
  -v          also output statistics for each sequence [False]
  -d <int>    decimals for output result [2]
  -N          do not take non-ATGC bases into account when caculate percentage
              [False]

Author

Guanliang MENG

Citation

Currently I have no plan to publish atgcN_count.

Project details


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